Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Im Neuenheimer Feld 205, Heidelberg 69120, Germany. stoichiometrically coupled transport (cotrans... Join ResearchGate to find the people and research you need to help your work. Stefan has 5 jobs listed on their profile. It also performs basic manipulations and analyses of the structures of protein–ligand complexes. Schloss-Wolfsbrunnenweg 35 69118 Heidelberg Germany. Stefan Richter. Contributors to SDA version 7 are: Michael Martinez, Neil Bruce, Abraham Muniz Chicharro, Julia Romanowska, Daria Kokh, Paolo Mereghetti, Xiaofeng Yu, Musa Ozboyaci, Martin Reinhardt, Patrick Friedrich, Razif Gabdoulline, Stefan Richter … University of Heidelberg postdoctoral scholar Stefan Richter and Chicago Booth’s Ekaterina Smetanina put forward a framework for analyzing how forecasting models perform as conditions change. According to University of Heidelberg postdoctoral scholar Stefan Richter and Chicago Booth’s Ekaterina Smetanina, testing for the best model assumes there actually is an always-best model. HITS gGmbH Heidelberg Institute for Theoretical Studies. Richter, Stefan: Cross validation for locally stationary processes / by Stefan Richter and Rainer Dahlhaus, 22 May 2019. Die einfache Struktur ermöglicht sowohl deren Anwendungen auf Klassifikations- als auch Regressionsprobleme. In this paper some general theory is presented for locally stationary processes based on the stationary approximation and the stationary derivative. for carrying out Brownian dynamics simulations that can be used to study the interactions between two or more biological macromolecules. Stefan Richter Heidelberg University Ekaterina Smetanina University of Chicago November 3, 2020 Abstract Out-of-sample tests are widely used for evaluating and selecting between models’ forecasts in economics and finance. (2) Goutam Mukherjee, Prajwal Nandekar, Ghulam Mustafa, Stefan Richter, Rebecca C. Wade, A Multi-resolution Approach to the Simulation of Protein Complexes in a Membrane Bilayer, High Performance Computing in Science and Engineering ' … Join ResearchGate to find the people and research you need to help your work. IT Specialist. carrier mechanisms, i.e. 51.2017, 4, … View Stefan Richter’s profile on LinkedIn, the world’s largest professional community. Master Student. A 'read' is counted each time someone views a publication summary (such as the title, abstract, and list of authors), clicks on a figure, or views or downloads the full-text. The specific evolution is modeled by an encoder-decoder structure. biology. The results are applicable for different statistics under a broad setting of locally stationarity... We develop a uniform test for detecting and dating explosive behavior of a strictly stationary GARCH$(r,s)$ (generalized autoregressive conditional heteroskedasticity) process. Abstract. More Information. Simulation of diffusional association (SDA) is a software Introduction, general comments and pre-processing 2. Accurate protein druggability predictions are important for the selection of drug targets in the early stages of drug discovery. © 2008-2021 ResearchGate GmbH. We have therefore developed two statistical models, a logistic regression model (TRAPP-LR) and a convolu... We describe a transferable multiresolution computational approach to build and simulate complexes of two proteins—cytochrome P450 (CYP) and CYP reductase (CPR)—in a membrane bilayer using Brownian dynamics (BD) and all-atom molecular dynamics (MD) simulations. BDBDB5. Due to the flexible nature of proteins, the druggability of a binding pocket may vary due to conformational changes. Dr. Rafael Barranco-Droege, Heidelberg Picture credits: S. Hermann & F. Richter on Pixabay Diesen Beitrag DSGVO-konform teilen / Share this in accordance to data protection rules: Initially developed to calculate bimolecular protein-protein association rate constants, it has since been extended to study electron transfer rates, to predict the structures of biomacromolecular co... LigDig is a webserver designed to answer questions that previously required several independent queries to diverse data-sources. Rainer Dahlhaus, Stefan Richter, Wei Biao Wu (2017). Summary: LigDig is a web server designed to answer questions that previously required several independent queries to diverse data sources. See the complete profile on LinkedIn and discover Stefan’s connections and jobs at similar companies. Computational Chemistry & Biology; previously Bio- and Chemoinformatics; Intelligent Systems and Production Engineering (ISPE), Molecular and Cellular Modeling Group (MCM), Druggability Assessment in TRAPP Using Machine Learning Approaches, Druggability Assessment in TRAPP using Machine Learning Approaches, A Multi-resolution Approach to the Simulation of Protein Complexes in a Membrane Bilayer, TRAPP webserver: Predicting protein binding site flexibility and detecting transient binding pockets, ProSAT+: Visualizing sequence annotations on 3D structure, Dynathor: Dynamics of the Complex of Cytochrome P450 and Cytochrome P450 Reductase in a Phospholipid Bilayer, webSDA: a web server to simulate macromolecular diffusional association, SDA 7: A modular and parallel implementation of the simulation of diffusional association software, LigDig: A web server for querying ligand-protein interactions. Stefan Richter Theoretical Computer Science RWTH Aachen Ahornstraße 55 52056 aachen, Germany Daniel Sawitzki Computer Science 2 University of Dortmund 44221 Dortmund, Germany Thomas Schank Faculty of Informatics ... c Springer-Verlag Berlin Heidelberg 2005. Our results extend known results for stationary mixing sequences by another common possibility to measure dependence and allow for additional time dependence. Duschen oder überdachten Radständern, ist aber auch das kein Problem. Towards a general theory for non-linear locally stationary processes. University students and faculty, institute members, and independent researchers, Technology or product developers, R&D specialists, and government or NGO employees in scientific roles, Health care professionals, including clinical researchers, Journalists, citizen scientists, or anyone interested in reading and discovering research. Der Grundgedanke der hier vorgestellten Algorithmen ist, dass die wesentlichen Informationen der Trainingsdaten oft bereits in einem niedrigdimensionaleren Unterraum liegen und diese Unterräume identifiziert werden müssen. Danach erfolgt schrittweise ein Übergang zu einer formalen Ausdrucksweise mit Hilfe der statistischen Entscheidungstheorie. We estimate the evolution with an encoder-decoder neural network and give upper bounds for the expected forecast error under specific... We provide a framework for empirical process theory of locally stationary processes using the functional dependence measure. Sungho Han. Organization of the file system for applying the RAMD procedure 4. Protein Structure Annotation Tool-plus (ProSAT+) is a new web server for mapping protein sequence annotations onto a protein structure and visualizing them simultaneously Im Gegensatz zum Supervised Learning werden hier nur noch Realisierungen des feature-Vektors X beobachtet, jedoch kein zugehöriges Y. Zu Beginn des Kapitels werden zunächst zwei mögliche Ziele des Unsupervised Learning formuliert. Simultaneous inference for time-varying models, Forecasting time series with encoder-decoder neural networks, Empirical process theory for locally stationary processes, Unsupervised Learning: Dimensionsreduktion, Unsupervised Learning: Bestimmung von Repräsentanten, Lineare Algorithmen für Regressionsprobleme, Lineare Methoden für Klassifizierungsprobleme und SVMs, Reinforcement Learning/Bestärkendes Lernen, Nichtparametrische Methoden und der naive Bayes-Klassifizierer, Regressions- und Klassifikationsbäume; Bagging, Boosting und Random Forests, Adaptation for nonparametric estimators of locally stationary processes, A supreme test for periodic explosive GARCH, Cross validation for locally stationary processes, Towards a general theory for non-linear locally stationary processes, Convergence to Equilibrium for Time-Inhomogeneous Jump Diffusions with State-Dependent Jump Intensity, Adaptive Estimation for Non-stationary Factor Models And A Test for Static Factor Loadings. Analysis) is a procedure to compare and analyze protein molecular interaction fields, such as the electrostatic potential. KBbox: A Toolbox of Computational Methods for Studying the Kinetics of Molecular Binding Neil J. Bruce,*,† Gaurav K. Ganotra,†,‡ Stefan Richter,† and Rebecca C. Wade*,†,§,∥ †Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg 35, 69118 Heidelberg, Germany ‡Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences … Stefan RICHTER of Heidelberger Institut für Theoretische Studien, Heidelberg (HITS) | Read 21 publications | Contact Stefan RICHTER Universitat Heidelberg Im Neuenheimer Feld 205 69120 Heidelberg, Germany. Because of the flexible nature of proteins, the druggability of a binding pocket may vary due to conformational changes. Protein molecular interaction fields are key determinants of protein functionality. SIMULTANEOUS INFERENCE FOR TIME-VARYING MODELS By Sayar Karmakar1, Stefan Richter2 and Wei Biao Wu3 University of Florida, Heidelberg University and University of Chicago 1Corresp BibTeX @MISC{Tobias07ausheidelberg, author = {Diplom-physiker Tobias and Stefan Richter and Von Fakultät and Ii Mathematik and Doktor Der Naturwissenschaften}, title = {aus Heidelberg… PIPSA (Protein Interaction Property Similarity Through simulation studies on the HLRS CRAY systems (initially XE6, later on XC40), we investigated the interactions of models of membrane-bound P450s (CYP51 and CYP1A... Macromolecular interactions play a crucial role in biological systems. The results are applicable to a wide range of locally stationary processes such linear and nonlinear processes. 2 … The current version of SDA (Simulation of Diffusional Association) may be downloaded from this page: SDA: Simulation of Diffusional Association Version 7. Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno ... Pressesprecher der Universität Heidelberg Tel. In diesem Kapitel betrachten wir eine Klasse von nichtparametrischen Algorithmen, welche in der Literatur als „Bäume“ bekannt sind. Andreas Weidemann1,2,†, Stefan Richter3, ... 69118 Heidelberg, 2Department for Modeling of Biological Processes, Institute for Zoology, BIOQUANT, Im Neuenheimer Feld 267, 69120 Heidelberg and 3Molecular and Cellular Modeling Group, EML Research, Schloss-Wolfsbrunnenweg 33, 69118 Heidelberger Institut für Theoretische Studien, Rutgers, The State University of New Jersey, Pacific Institute of Bioorganic Chemistry, Department of Global Public Health and Primary Care. Founder of the student collaboration platform www.wiwistud.de, currently consisting of more than 10000 student members. Required software and data 3. Heidelberg Institute for Theoretical Studies. The mechanism of the "ground permeability" of the human erythrocyte membrane for K+ and Na+ was investigated with respect to a possible involvement of a previously unidentified specific transport pathway, because earlier studies showed that it cannot be explained on the basis of simple electrodiffusion. Stefan Richter 1 , Anne Wenzel, Matthias Stein, Razif R Gabdoulline, Rebecca C Wade Affiliation 1 Molecular and Cellular Modeling Group, EML Research gGmbH, Schloss-Wolfsbrunnenweg 33, Heidelberg, Germany. Zunächst geben wir Beispiele typischer Problemstellungen und formalisieren diese anhand von Markov-Entscheidungsprozessen. We prove asymptotic optimality of the procedure under mild conditions on the underlying parameter curves. PIPSA may assist in protein functional assignment, classification of proteins, the comparison of... SYCAMORE is a browser-based application that facilitates construction, simulation and analysis of kinetic models in systems Sorry, you need to be a researcher to join ResearchGate. Daria B. Kokh, Bernd Doser, Xingyi Cheng, Stefan Richter, Rebecca C. Wade, Heidelberg Institute for Theoretical Studies (HITS gGmbH), Germany Email contact: mcmsoft@h-its.org Content 1. Frei, Stefan; Richter, Thomas A second order time-stepping scheme for parabolic interface problems with moving interfaces In: Mathematical modelling and numerical analysis: an international journal on applied mathematics - Les Ulis: EDP Sciences, Bd. database supported modelling, basic model checking and the estimation of unknown kinetic parameters In this paper, we consider high-dimensional stationary processes where a new observation is generated from a compressed version of past observations. The simulation of diffusional association (SDA) Brownian dynamics software package has been widely used in the study of biomacromolecular association. Dr. Stefan Richter. Accurate protein druggability predictions are important for the selection of drug targets in the early stages of drug discovery. As the successor of ProSAT (Protein Structure Annotation Tool), it includes its features for visualizing (1) E-mail: stefan.richter@iwr.uni-heidelberg.de, 3Department of Statistics University of Chicago 5747 S. Ellis Avenue Chicago, IL 60637, USA. Stefan Richter's 17 research works with 58 citations and 432 reads, including: Simultaneous inference for time-varying models All rights reserved. Sehen Sie sich Stefan Richters vollständiges Profil an. © 2008-2021 ResearchGate GmbH. 1993 06221 542310, Fax 542317 michael.schwarz@rektorat.uni-heidelberg.de Irene Thewalt Namely, we test the null hypothesis of a globally stable GARCH process with constant parameters against an alternative where there is an 'abnormal' period with changed param... We propose an adaptive bandwidth selector via cross validation for local M-estimators in locally stationary processes. arXiv:1704.02860v2; Stefan Richter, Rainer Dahlhaus (2017). View the profiles of professionals named "Stefan Richter" on LinkedIn. protein structures. - 29 S. In: The annals of statistics, ISSN 2168-8966. Lösungen von Problemen des Supervised Learning sind durch sogenannte Algorithmen gegeben; einige Standardmethoden z... Das Kapitel beschäftigt sich mit Algorithmen für Klassifikationsprobleme, bei welchen sich eine optimale Diskriminantenfunktion linear im feature-Vektor X schreiben lässt. In diesem Kapitel geben wir eine Einführung in das Paradigma des Reinforcement Learning und verlassen gleichzeitig den Bereich des Supervised Learning. “Stefan Richter is one of the most important chroniclers of modern tattooing … Without his photography, studying the history of British tattooing would … 1994 – 1997. The Dynathor project aims at understanding the interaction of cytochrome P450 (CYP, P450) enzymes and their redox partner, cytochrome P450 reductase (CPR), in a phospholipid bilayer. (3) arXiv:1705.10046v1 More Information. By Diplom-physiker Tobias, Stefan Richter, Von Fakultät, Ii Mathematik and Doktor Der Naturwissenschaften. Nach einer Untersuchung der Eindeutigkeit der Bayes-Regel werden die Begriffe des Entscheidungsrands, der Entscheidungsregion und der Diskriminantenfunktion eingeführt, welche einen alternativen Zugang zur Ermittlung der B... Two adaptive bandwidth selection methods for nonparametric estimators in locally stationary processes are proposed. Herein, this is illustrated by ap... ProSAT2 is a server to facilitate interactive visualization of sequence-based, residue-specific annotations mapped onto 3D E-mail: wbwu@galton.uchicago.edu A general class of time-varying regression models which cover gen- In diesem Kapitel wird allgemeine Theorie für Klassifikationsprobleme im Rahmen des Supervised Learning zur Verfügung gestellt. We investigate a cross validation approach and a method based on contrast minimization and derive asymptotic properties of both methods. Rebecca Wade (HITS/Heidelberg University) Rommie Amaro (University of California San Diego) Ariane Nunes-Alves, Abraham Muniz Chicharro and Stefan Richter (HITS), Lane Votapka (UCSD) Printing with firefox may result in only the first page being printed. , USA general class of time-varying regression models is considered in this paper and jobs at companies! 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Feld 205 69120 Heidelberg, Germany used to construct simultaneous confidence bands package been. The world ’ s largest professional community and research you need to help your.... Photo electron emission and photo absorption and analyses of the structures of protein–ligand complexes setz... das Kapitel führt Problemstellung... A web server designed to answer questions that previously required several independent queries to diverse data sources send. Von nichtparametrischen Algorithmen, welche in der Literatur als stefan richter heidelberg Bäume “ bekannt.... Determinants of protein functionality results are applicable to a wide range of locally stationary processes based protein... Possibility to measure dependence and allow for that, ” says Smetanina on the underlying curves... Modeled by an encoder-decoder structure a cross validation approach and a method based on protein structures Approximation and the of!, USA protein druggability predictions are important for the selection of drug.! Learning betrachtet IL 60637, USA Klassifikations- als auch Regressionsprobleme parameters based protein!

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